Training materials
Difficulty level: Beginner
and Contributors: Simon Gladman
and Target audience: PhD Students or Students or data managers or plant researchers
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hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
hands-on tutorial
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
Downloading and Deleting Data in Galaxy
• beginnerUsing Galaxy and Managing your Data -
slides
Genome annotation with Prokka
• beginnerGenome Annotation prokaryote -
slides
Unicycler Assembly
• beginnerSequence assembly Assembly prokaryote -
slides
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
slides
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly