Training materials
Contributors: Saskia Hiltemann
and Keywords: Data management or Exploratory-analysis or FAIR data or HCI or Julia or Random variables and probability distributions or assembly or metagenomics
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hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for '16S Microbial Analysis with mothur (extended)' tutorial
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hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Antibiotic resistance detection' tutorial
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hands-on tutorial
Hands-on for 'Analyses of metagenomics data - The global picture' tutorial
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hands-on tutorial
Hands-on for '16S Microbial Analysis with mothur (short)' tutorial
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slides
Slides for 'Introduction to metatranscriptomics' tutorial