Training materials
Contributors: Prof. Tom Freeman or Andrea Argentini or Mateusz Kuzak or Patricia Palagi or Matthias Fahrner or Jure Dimec or Jan Slifka or Michael Ball or Alexandre Cormier or Marius van den Beek
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hands-on tutorial
Hands-on for 'Use Apptainer containers for running Galaxy jobs' tutorial
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hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateSequence assembly assembly quality control -
slides
Slides for 'Genome assembly quality control.' tutorial
• beginnerSequence assembly assembly -
hands-on tutorial
Hands-on for 'From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis' tutorial
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hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Genome assembly using PacBio data' tutorial
•• intermediateSequence assembly assembly pacbio -
hands-on tutorial
Hands-on for 'MaxQuant and MSstats for the analysis of TMT data' tutorial
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hands-on tutorial
Hands-on for 'Peptide and Protein Quantification via Stable Isotope Labelling (SIL)' tutorial
••• advancedProteomics proteomics DDA SILAC -
hands-on tutorial
Hands-on for 'Library Generation for DIA Analysis' tutorial
•• intermediateProteomics proteomics DIA -
hands-on tutorial
Hands-on for 'DIA Analysis using OpenSwathWorkflow' tutorial
•• intermediateProteomics proteomics DIA