Training materials
Scientific topics: Genetic variation or Genetics or Protein modifications or Transcriptomics
and Contributors: Maria Doyle or Simon Gladman or carpentries-incubator or dario righelli
-
carpentries-incubator/scrna-seq-analysis
-
drighelli/SpatialExperiment_Bioc2021
-
carpentries-incubator/bioc-rnaseq
-
hands-on tutorial
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Visualization of RNA-Seq results with Volcano Plot
• beginnerTranscriptomics -
hands-on tutorial
Visualization of RNA-Seq results with Volcano Plot in R
•• intermediateTranscriptomics interactive-tools -
hands-on tutorial
3: RNA-seq genes to pathways
• beginnerTranscriptomics mouse -
hands-on tutorial
GO Enrichment Analysis
• beginnerTranscriptomics -
hands-on tutorial
2: RNA-seq counts to genes
• beginnerTranscriptomics QC limma-voom mouse
- 1
- 2