Training materials
Scientific topics: Data management or Gene expression and microarray or Protein binding sites or Python script
and Contributors: ELIXIR Europe Training or ELIXIR-CONVERGE WP2 members or Vassilios Ioannidis or Vasundra Touré
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e-learning
Interoperable File Formats
• beginnerData management Formatting Interoperability File formats Standards -
elixir-europe-training/ELIXIR-TrP-ContainersPython-CodeRep
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elixir-europe-training/ELIXIR-TrP-FAIR-Converge
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e-learning
Vocabularies for bioinformatics
• beginnerBioinformatics Data management Data submission, annotation, and curation Data handling Data retrieval Database search Ontologies Interoperability Standardised vocabulary Standards -
Video
ELIXIR-CONVERGE - The why of research data management
• beginnerData management FAIR data Data submission, annotation, and curation Data security Data integration and warehousing Data Life Cycle Data Steward Data Data access management Data management plan Data managment plan Data handling ELIXIR-CONVERGE -
Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval Clinical data SPARQL Data visualization RDF Knowledge graph GraphDB Mock data -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB