Training materials
Contributors: Dr. Sean I O’Donoghue or Eija Korpelainen or Florian Christoph Sigloch or Janick Mathys or Mehmet Tekman or Pratik Jagtap or Stéphanie Robin
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hands-on tutorial
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Clinical Metaproteomics 3: Verification
• beginnerProteomics label-TMT11 -
hands-on tutorial
Clinical Metaproteomics 5: Data Interpretation
• beginnerProteomics label-TMT11 -
hands-on tutorial
Clinical Metaproteomics 4: Quantitation
• beginnerProteomics label-TMT11 -
hands-on tutorial
Clinical Metaproteiomics 1: Database-Generation
• beginnerProteomics label-TMT11 -
hands-on tutorial
Clinical Metaproteomics 2: Discovery
• beginnerProteomics label-TMT11 -
ekorpela/cloud-vm-workshop