Training materials
Keywords: Assembly or Containerization or data reuse or git-gat or plasmids
and Contributors: Dr. Konstantinos Sidiropoulos or Saskia Hiltemann or Thomas Denecker or awesome-workshop
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awesome-workshop/docker-singularity-hats
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thomasdenecker/FAIR_Bioinfo
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hands-on tutorial
Deploying a Beacon v1 in Galaxy
• beginnerGalaxy Server administration beacon ga4gh git-gat -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Antibiotic resistance detection' tutorial
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hands-on tutorial
Training Infrastructure as a Service (TIaaS)
• beginnerGalaxy Server administration ansible git-gat jobs training -
hands-on tutorial
Data Libraries
• beginnerGalaxy Server administration ansible git-gat storage -
hands-on tutorial
Galaxy Installation with Ansible
• beginnerDatabase management Informatics Data management Galaxy Server administration ansible deploying git-gat
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