Training materials
Target audience: Students
and Contributors: Delphine Lariviere or Emily Angiolini or Frederick Carver or Matthias Fahrner or Prof. Marc Streit or Prof. Tom Freeman or Ray Sajulga or SIB Swiss Institute of Bioinformatics or cambiotraining
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hands-on tutorial
Hands-on for 'Essential genes detection with Transposon insertion sequencing' tutorial
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hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
hands-on tutorial
MaxQuant and MSstats for the analysis of TMT data
• beginnerProteomics DDA TMT -
hands-on tutorial
Proteogenomics 1: Database Creation
•• intermediateProteomics proteogenomics -
hands-on tutorial
Proteogenomics 2: Database Search
•• intermediateProteomics proteogenomics -
hands-on tutorial
Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
••• advancedProteomics DDA SILAC -
hands-on tutorial
Library Generation for DIA Analysis
•• intermediateProteomics DIA