Training materials
Contributors: Delphine Lariviere or Eija Korpelainen or Emma Leith or Felix Almonte or Hana Pergl Sustkova or Mehmet Tekman or Michael Ball or Michael Krone or Pratik Jagtap or Prof. Tom Freeman or The Carpentries
-
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Clinical-MP-3-Verification
• beginnerProteomics label-TMT11 -
hands-on tutorial
Clinical-MP-4-Quantitation
• beginnerProteomics label-TMT11 -
hands-on tutorial
Clinical-MP-5-Data Interpretation
• beginnerProteomics label-TMT11 -
hands-on tutorial
Clinical-MP-2-Discovery
• beginnerProteomics label-TMT11 -
hands-on tutorial
Clinical-MP-1-Database-Generation
• beginnerProteomics label-TMT11 -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
ekorpela/cloud-vm-workshop
-
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial