Training materials
Contributors: Daniel Faria or Emma Leith or Florian Christoph Sigloch or Gildas Le Corguillé or Hélène Chiapello or Melanie Föll
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hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
metaQuantome 3: Taxonomy
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy microgalaxy -
hands-on tutorial
MaxQuant and MSstats for the analysis of TMT data
• beginnerProteomics DDA TMT -
hands-on tutorial
Secretome Prediction
•• intermediateProteomics human work-in-progress -
hands-on tutorial
Label-free versus Labelled - How to Choose Your Quantitation Method
• beginnerProteomics DDA -
hands-on tutorial
Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
••• advancedProteomics DDA SILAC -
hands-on tutorial
metaQuantome 2: Function
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics microgalaxy -
hands-on tutorial
metaQuantome 1: Data creation
•• intermediateProteomics Proteogenomics Biodiversity Taxonomy microgalaxy -
hands-on tutorial
Peptide and Protein ID using SearchGUI and PeptideShaker
• beginnerProteomics DDA HeLa -
hands-on tutorial
Library Generation for DIA Analysis
•• intermediateProteomics DIA