Training materials
Difficulty level: Beginner
and Contributors: Cristóbal Gallardo or Juha Tornroos or Laura Leroi or Luigi Grassi or Michael Ball or Prof. Richard Baldock
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slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Visualisation with Circos
• beginnerVisualisation -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerTranscriptomics Single Cell paper-replication plants -
hands-on tutorial
Understanding Galaxy history system
• beginnerUsing Galaxy and Managing your Data -
hands-on tutorial
Introduction to Genomics and Galaxy
• beginnerIntroduction to Galaxy Analyses -
slides
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
• beginnerSequence assembly Assembly covid19 -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
slides
Mapping
• beginnerSequence analysis -
slides
Quality Control
• beginnerSequence analysis
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