Training materials
Contributors: Collins Assisi or Eija Korpelainen or Emily Angiolini or Mehmet Tekman or Prof. Jessie Kennedy or Prof. Tom Freeman or Susan Coort
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hands-on tutorial
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
ekorpela/cloud-vm-workshop
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hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Pre-processing of Single-Cell RNA Data
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerTranscriptomics Single Cell paper-replication plants -
hands-on tutorial
Clustering 3K PBMCs with Scanpy
• beginnerTranscriptomics 10x Single Cell