Training materials
Scientific topics: Computer programming or Protein sequence classification
and Contributors: Coline Royaux or Dan Bolser or Emily Angiolini or Erasmus+ Programme or Michael Ball or Ms. Sejal Modha or Prof. Tom Freeman or Ray Sajulga or Stephan Nylinder
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lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
CLI Educational Game - Bashcrawl
•• intermediateSoftware engineering Foundations of Data Science bash game jupyter-notebook -
hands-on tutorial
Advanced CLI in Galaxy
•• intermediateSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
Plotting in Python
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
CLI basics
• beginnerSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
SQL Educational Game - Murder Mystery
•• intermediateSoftware engineering Foundations of Data Science SQL game jupyter-notebook -
hands-on tutorial
Advanced R in Galaxy
•• intermediateSoftware engineering Foundations of Data Science R -
hands-on tutorial
dplyr & tidyverse for data processing
••• advancedSoftware engineering Foundations of Data Science R jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Introduction to Python
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook
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