Training materials
Scientific topics: Data management
and Contributors: Celia van Gelder or Emily Angiolini or Prof. Tom Freeman or Robert Pergl or SIB Swiss Institute of Bioinformatics or Vassilios Ioannidis or Vilem Ded or Yvonne Kallberg
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e-learning
Interoperable File Formats
• beginnerData management Formatting Interoperability File formats Standards -
sib-swiss/ena-seqdata-training
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sib-swiss/Introduction-FAIR-RDM-DMP
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sib-swiss/sparql-training
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e-learning
Vocabularies for bioinformatics
• beginnerBioinformatics Data management Data submission, annotation, and curation Data handling Data retrieval Database search Ontologies Interoperability Standardised vocabulary Standards -
lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
lessons, e-learning
Introduction to Data Management Practices - Introduction to RStudio
• beginnerData management FAIR data RStudio CONVERGE README -
lessons, e-learning
Introduction to Data Management Practices - Scripted analysis with R
• beginnerData management FAIR data Bioinformatics Data visualisation RStudio CONVERGE ggPlot -
lessons, e-learning
Introduction to Data Management Practices - Cleaning tabular data with OpenRefine
• beginnerData management Open science FAIR data FAIR CONVERGE -
lessons, e-learning
Introduction to Data Management Practices - Metadata
• beginnerData management FAIR data data organisation FAIR CONVERGE ontologies metadata Controlled vocabularies
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