Training materials
Difficulty level: Intermediate
and Contributors: Carina Silva or David Philip Judge or Marius van den Beek or Michael Parkin or Robert Andrews or Sergio Martínez Cuesta or Stéphanie Robin
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hands-on tutorial
Python - Type annotations
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
Video
RDMbites: Image data
•• intermediateimaging data management -
Video
RDMbites: Sequencing data
•• intermediatetranscriptomics FASTQ FastQC Sequencing -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
Workflow Reports
•• intermediateUsing Galaxy and Managing your Data workflows -
hands-on tutorial
Creating, Editing and Importing Galaxy Workflows
•• intermediateUsing Galaxy and Managing your Data workflows -
hands-on tutorial
Using Workflow Parameters
•• intermediateUsing Galaxy and Managing your Data workflows -
Documentation, Exercise, Handout, Scripts
PPB18 - Programming in Python for Biologists (2018)
•• intermediateData retrieval Data handling Bioinformatics Biology Biological databases
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