Training materials
Keywords: Introduction to Galaxy Analyses or R or assembly or automation
and Contributors: Branka Franicevic or Harvard and Dana-Farber Cancer Institute or Helena Rasche or Mark Beaumont
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
rafalab/dsbook-part-2
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rafalab/dsbook-part-1
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rafalab/dsbook
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hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
Automation with Jenkins
• beginnerGalaxy Server administration ansible automation -
hands-on tutorial
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook
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