Training materials
Contributors: Brane Leskosek or Common Fund Data Ecosystem or David Bouyssié or Eija Korpelainen @eija, ekorpelainen@gmail.com or Emma Leith or Gildas Le Corguillé
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nih-cfde/training-and-engagement
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hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
metaQuantome 3: Taxonomy
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy microgalaxy -
hands-on tutorial
metaQuantome 2: Function
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics microgalaxy -
hands-on tutorial
metaQuantome 1: Data creation
•• intermediateProteomics Proteogenomics Biodiversity Taxonomy microgalaxy -
hands-on tutorial
EncyclopeDIA
• beginnerProteomics DIA -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Mass spectrometry: LC-MS preprocessing with XCMS
•• intermediateMetabolomics -
hands-on tutorial
Mass spectrometry: LC-MS analysis
• beginnerMetabolomics
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