Training materials
Difficulty level: Intermediate
and Contributors: Björn Grüning or Celia van Gelder or Dr. Simon Andrews or Jamie Edwards or Katarzyna Kamieniecka or Manimozhiyan Arumugam or Marek Vrbacky or Patricia Palagi or Wolfgang Maier
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hands-on tutorial
Sequence data submission to ENA
•• intermediateFAIR ENA sequence datasets -
hands-on tutorial
Making clinical datasets FAIR
•• intermediateFAIR clinical data -
hands-on tutorial
Hands-on for 'Avian influenza viral strain analysis from gene segment sequencing data' tutorial
•• intermediatevariant-analysis virology -
hands-on tutorial
Hands-on for 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial
•• intermediatevariant-analysis covid19 virology one-health -
hands-on tutorial
Hands-on for 'Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads' tutorial
•• intermediateassembly covid19 -
hands-on tutorial
Hands-on for 'Secretome Prediction' tutorial
•• intermediateproteomics human -
hands-on tutorial
Detection and quantitation of N-termini (degradomics) via N-TAILS
•• intermediateProteomics -
hands-on tutorial
Hands-on for 'Removal of human reads from SARS-CoV-2 sequencing data' tutorial
•• intermediatesequence-analysis covid19 -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining