Training materials
Difficulty level: Intermediate
and Contributors: Björn Grüning or Celia van Gelder or Christopher Barnett or Felix Almonte or Kenneth Hoste or Manimozhiyan Arumugam or Marek Vrbacky or Rafael C Jimenez or The Carpentries Lab
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hands-on tutorial
AlphaFold and friends on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction AlphaFold Database (13181) -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
hands-on tutorial
Hands-on for 'Secretome Prediction' tutorial
•• intermediateproteomics human -
hands-on tutorial
Detection and quantitation of N-termini (degradomics) via N-TAILS
•• intermediateProteomics -
hands-on tutorial
Analysis of molecular dynamics simulations
•• intermediateComputational chemistry -
hands-on tutorial
Running molecular dynamics simulations using NAMD
•• intermediateComputational chemistry -
hands-on tutorial
Setting up molecular systems
•• intermediateComputational chemistry -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining