Training materials
Scientific topics: Software engineering
and Contributors: Biocore@CRG or CRUK CI Bioinformatics Core or Carolyn Hogg or Celia van Gelder or Mark Beaumont or Markus Englund or The Carpentries
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lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
hands-on tutorial
Variant Calling Workflow
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
SQL with Python
•• intermediateSoftware engineering Foundations of Data Science Python SQL jupyter-notebook -
hands-on tutorial
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Python - Flow Control
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Python - Loops
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Python - Basic Types & Type Conversion
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Advanced CLI in Galaxy
•• intermediateSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
Plotting in Python
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Python - Functions
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook
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