Training materials
Contributors: Beatriz Serrano-Solano or Delphine Lariviere or Dr. Manuel Corpas or Michael Krone or Prof. Jessie Kennedy or Prof. Tom Freeman
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hands-on tutorial
Hands-on for 'Essential genes detection with Transposon insertion sequencing' tutorial
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hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
hands-on tutorial
Hands-on for 'Whole transcriptome analysis of Arabidopsis thaliana' tutorial
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hands-on tutorial
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerTranscriptomics Single Cell paper-replication plants -
hands-on tutorial
Object tracking using CellProfiler
• beginnerImaging -
hands-on tutorial
Nucleoli segmentation and feature extraction using CellProfiler
• beginnerImaging -
hands-on tutorial
Use Jupyter notebooks in Galaxy
• beginnerUsing Galaxy and Managing your Data
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