Training materials
Scientific topics: MicroRNA sequencing or Personal genomics
and Contributors: Beatriz Serrano-Solano or Biocore@CRG or Dr. Colin Combe or Helena Rasche or Jordi Rambla or Michael Ball or Ms. Sejal Modha or Vicky Schneider or carpentries-incubator
-
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
carpentries-incubator/scrna-seq-analysis
-
biocorecrg/RNAseq_course_2019
-
carpentries-incubator/bioc-rnaseq
-
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
Video, Manual, Slides, Installation instructions
How to install and deploy Beacon
• beginnerGenomics genomics open access eLearning EeLP