Training materials
Scientific topics: Data management or Public health and epidemiology
and Contributors: Bazante Sanders or Collins Assisi or ELIXIR Europe or Marek Vrbacky or Marko Vidak or Michael Ball or Paul Yorke or Vicky Schneider or bioinformatics.ca
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
bioinformaticsdotca/IDE_2024
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bioinformaticsdotca/IDE_2023
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elixir-europe/rdmkit
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hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
course materials, Training materials, Slides
Implementation of Data Management Plans & Data Stewardship in practice