Training materials
Scientific topics: Data management or Whole genomes
and Contributors: Bazante Sanders or Chris Evelo or Data Carpentry or Dr. Scooter Morris or Janick Mathys or JuliaAcademy
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
datacarpentry/cloud-genomics
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datacarpentry/organization-genomics
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datacarpentry/genomics-r-intro
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datacarpentry/genomics-workshop
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datacarpentry/wrangling-genomics
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datacarpentry/shell-genomics
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hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy