Training materials
Scientific topics: Microbiological surveillance
and Contributors: Bazante Sanders or Björn Grüning or Celia van Gelder or Eija Korpelainen or Jamie Edwards or Manimozhiyan Arumugam or Marek Vrbacky or Mehmet Tekman or Mr. William Edward Hill or NBIS - National Bioinformatics Infrastructure S... or PhD BSc FSB or rstudio::conf(2022)
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy