Training materials
Difficulty level: Intermediate
and Contributors: Bang Wong or Björn Grüning or Celia van Gelder or Cristóbal Gallardo or David Castillo or Dr. Simon Andrews or Eija Korpelainen or Jalview Coordinator or Jamie Edwards or Jyoti Khadake or Manimozhiyan Arumugam or Marek Vrbacky or Nuwan Goonasekera or posit-conf-2023
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Secretome Prediction
•• intermediateProteomics human work-in-progress -
hands-on tutorial
Detection and quantitation of N-termini (degradomics) via N-TAILS
•• intermediateProteomics -
hands-on tutorial
Managing Galaxy on Kubernetes
•• intermediateGalaxy Server administration kubernetes -
hands-on tutorial
Galaxy Installation on Kubernetes
•• intermediateGalaxy Server administration kubernetes -
Documentation, Exercise, Handout, Scripts
3DAROC18 - 3C-based data analysis and 3D reconstruction of chromatin folding (2018)
•• intermediateHi-C -
course materials
Single-cell RNA-seq data analysis with R 2022
•• intermediateRNA-Seq RNA-Seq Single Cell technologies scRNA-seq -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining