Training materials
Difficulty level: Beginner
and Contributors: Bang Wong or Bérénice Batut or Erasmus+ Programme or Jamie Edwards or Manimozhiyan Arumugam or Marek Vrbacky or Toby Hodges or Tuur Muyldermans
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Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
hands-on tutorial
Hands-on for 'Upload data to Galaxy' tutorial
• beginnerintroduction -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Reference-based RNA-Seq data analysis' tutorial
• beginnerTranscriptomics transcriptomics bulk rna-seq collections drosophila QC cyoa -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'CLI basics' tutorial
• beginnerSoftware engineering data-science bash jupyter-notebook -
hands-on tutorial
Hands-on for 'Introduction to Python' tutorial
• beginnerSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'From peaks to genes' tutorial
• beginnerintroduction -
hands-on tutorial
Hands-on for 'Quality Control' tutorial
• beginnerSequence analysis sequence-analysis
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