Training materials
Scientific topics: Genome annotation or RNA-Seq
and Contributors: Armando Arredondo or Eija Korpelainen or Melanie Föll or Mikko Rautiainen or Saskia Hiltemann
-
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
course materials, Training materials, Slides, Video
RNA-seq data analysis using Chipster
-
course materials
Single-cell RNA-seq data analysis with R 2022
•• intermediateRNA-Seq RNA-Seq Single Cell technologies scRNA-seq -
course materials, Video
Single cell RNA-seq data analysis with Chipster
• beginnerRNA-Seq RNA-Seq Single Cell technologies scRNA-seq -
course materials, Video
Virus detection using small RNA-seq
• beginnerRNA-Seq -
course materials, Video
RNA-seq data analysis
• beginnerRNA-Seq