Training materials
Scientific topics: Transcriptomics
and Contributors: Anton Nekrutenko or Dave Clements or Dr. Iain Milne or Dr. Ting Wang or Mehmet Tekman or Melanie Föll or Nate Coraor or Wendi Bacon
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hands-on tutorial
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Pre-processing of Single-Cell RNA Data
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Clustering 3K PBMCs with Scanpy
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerTranscriptomics Single Cell paper-replication plants -
hands-on tutorial
Downstream Single-cell RNA analysis with RaceID
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Reference-based RNAseq data analysis (long)
• beginnerTranscriptomics -
hands-on tutorial
Bulk RNA Deconvolution with MuSiC
• beginnerTranscriptomics Single Cell transcriptomics -
hands-on tutorial
Understanding Barcodes
• beginnerTranscriptomics Single Cell
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