Training materials
Difficulty level: Beginner
and Include archived: true
and Contributors: Anthony Bretaudeau or Dr. Iain Milne or Florian Heyl or Harald Barsnes or Youri Hoogstrate
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slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
JavaScript plugins
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Generic plugins
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
ATAC-Seq data analysis
• beginnerEpigenomics Epigenetics -
hands-on tutorial
RNA-Seq analysis with AskOmics Interactive Tool
• beginnerTranscriptomics -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
CLIP-Seq data analysis from pre-processing to motif detection
• beginnerTranscriptomics -
hands-on tutorial
Galaxy Interactive Tools
• beginnerGalaxy Server administration ansible interactive-tools -
slides
Refining Genome Annotations with Apollo
• beginnerGenome Annotation prokaryote