hands-on tutorial

Hands-on for 'RNA-Seq analysis with AskOmics Interactive Tool' tutorial

The questions this addresses are:
- How to integrate RNA-Seq results with other datasets using AskOmics?
- How to query these datasets to answer a biological question?
- How to exploit a distant SPARQL endpoint to retrieve information?

The objectives are:
- Launch an AskOmics Interactive Tool
- Integrate RNA-Seq and reference datasets into AskOmics
- Create a complex query to get over-expressed genes, their location on the reference genome, and check if they are included in a known QTL
- Complete the query to get the human homologs and their location using neXtProt database

Licence: Creative Commons Attribution 4.0 International

Keywords: transcriptomics

Target audience: Students

Resource type: hands-on tutorial

Authors: Anne Siegel, Anthony Bretaudeau, Mateo Boudet, Olivier Dameron, Xavier Garnier

Contributors: Anne Siegel, Anthony Bretaudeau, Mateo Boudet, Olivier Dameron, Xavier Garnier


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