Training materials
Difficulty level: Beginner
and Contributors: Anthony Bretaudeau or Danielle Welter or Emily Angiolini or Marek Vrbacky or Martina Kutmon or Nazeefa Fatima or Prof. Tom Freeman or Sonika Tyagi
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Training materials
ELITMa Module "Data Management Strategy" (Finland 28-29 June 2023)
• beginnerResearch Data Management RDM Strategy Training -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
RNA-Seq analysis with AskOmics Interactive Tool
• beginnerTranscriptomics -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
Galaxy Interactive Tools
• beginnerGalaxy Server administration ansible interactive-tools -
slides
Refining Genome Annotations with Apollo
• beginnerGenome Annotation prokaryote -
slides
Prerequisites for building software/conda packages
• beginnerSoftware engineering Development in Galaxy -
slides
Tool Shed: sharing Galaxy tools
• beginnerSoftware engineering Development in Galaxy -
slides
Tool development and integration into Galaxy
• beginnerSoftware engineering Development in Galaxy
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