Training materials
Contributors: Anthony Bretaudeau or Clair Castle or Emily Angiolini or John "Scooter" Morris or Laura Leroi or Marek Vrbacky or Prof. Tom Freeman or The Carpentries
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hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
Long non-coding RNAs (lncRNAs) annotation with FEELnc
•• intermediateGenome Annotation eukaryote -
hands-on tutorial
Live Coding is a Skill
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Refining Genome Annotations with Apollo (eukaryotes)
•• intermediateGenome Annotation apollo2 cyoa eukaryote gmod jbrowse1 -
hands-on tutorial
Genome annotation with Maker
••• advancedGenome Annotation eukaryote gmod jbrowse1 maker -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Maker (short)
•• intermediateGenome Annotation eukaryote gmod jbrowse1 maker -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote