Training materials
Difficulty level: Beginner
and Contributors: Anne-Françoise Adam-Blondon or Bilal Shaikh or Emily Angiolini or Erasmus+ Programme or Jyoti Khadake or Prof. Tom Freeman or Roland Krause
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hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'CLI basics' tutorial
• beginnerdata-science bash jupyter-notebook -
hands-on tutorial
Hands-on for 'Introduction to Python' tutorial
• beginnerdata-science jupyter-notebook -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
Presentation
Data publishing and archival
• beginnerData publishing data archiving Data preserving -
Presentation
Practicalities of data handling
• beginnerData security Data acquisition Data management Data handling data encryption data protection setup checksums Data transfer Data storage data organisation -
Video, Slides
Plant Phenotyping Data managment Webinar (MIAPPE)
• beginnerPlant biology Phenomics Data quality management Data submission, annotation, and curation Standardisation and normalisation -
Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL -
Presentation
Introduction to FAIR principles
• beginnerFAIR data -
Train the trainer
• beginnerComputational biology Bioinformatics training pedagogy