Training materials
Difficulty level: Beginner
and Contributors: Anne-Françoise Adam-Blondon or Bérénice Batut or Dr. Roy Ruddle or Eija Korpelainen or Emily Angiolini or Maria Lehtivaara or Prof. David Willaim Burt or Prof. Tom Freeman or Stéphanie Robin
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hands-on tutorial
Upload data to Galaxy
• beginnerIntroduction to Galaxy Analyses -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Reference-based RNA-Seq data analysis' tutorial
• beginnertranscriptomics bulk rna-seq collections drosophila QC cyoa -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
From peaks to genes
• beginnerIntroduction to Galaxy Analyses -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
hands-on tutorial
Mapping
• beginnerSequence analysis Mapping -
hands-on tutorial
Quality Control
• beginnerSequence analysis
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