Training materials
Scientific topics: Experimental design and studies or Metabolomics or Natural language processing or Quality affairs or Transcriptomics
and Contributors: Anne Siegel or Graham Etherington or Nicola Soranzo or Wendi Bacon
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hands-on tutorial
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
RNA-Seq analysis with AskOmics Interactive Tool
• beginnerTranscriptomics -
hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Single-cell quality control with scater
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Bulk RNA Deconvolution with MuSiC
• beginnerTranscriptomics Single Cell transcriptomics -
slides
Integrate and query local datasets and distant RDF data with AskOmics using Semantic Web technologies
• beginnerTranscriptomics -
slides
Plates, Batches, and Barcodes
• beginnerTranscriptomics Single Cell