Training materials
Target audience: Students
and Contributors: Anne Pajon or Dan Bolser or Dr. Konstantinos Sidiropoulos or Erwan Corre or Marius van den Beek or Michael Ball or Ph.D. or Vicky Schneider or bioinformatics.ca
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hands-on tutorial
Python - Type annotations
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
Hands-on for 'Use Singularity containers for running Galaxy jobs' tutorial
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hands-on tutorial
Workflow Reports
•• intermediateUsing Galaxy and Managing your Data workflows -
hands-on tutorial
Group tags for complex experimental designs
• beginnerUsing Galaxy and Managing your Data