Training materials
Scientific topics: MS-based targeted proteomics or Microbiology
and Contributors: Andrea Argentini or Bazante Sanders or Björn Grüning or Dr. Simon Tomlinson or John "Scooter" Morris or Jure Dimec or Martin Krzywinski or Mateusz Kuzak or Patricia Palagi or Portada: Enrique Sahagún or Prof. Tom Freeman or Wolmar Nyberg Åkerström or bioinformatics.ca
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
bioinformaticsdotca/BMB_2024
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bioinformaticsdotca/AMB_2024
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bioinformaticsdotca/MIC_2022
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bioinformaticsdotca/MIC_2023
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hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
Secretome Prediction
•• intermediateProteomics human work-in-progress -
hands-on tutorial
Label-free versus Labelled - How to Choose Your Quantitation Method
• beginnerProteomics DDA -
hands-on tutorial
Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
••• advancedProteomics DDA SILAC
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