Training materials
Difficulty level: Beginner
and Contributors: Anatole Chessel or Cristóbal Gallardo or Dr. Nils Gehlenborg or Erik van Nimwegen or Fotis E. Psomopoulos or Sabine Österle or Stéphanie Robin
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hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
e-learning
ISMARA: A tool to infer genome-wide regulatory interactions
• beginnerSystems biology Gene regulation Transcription factors and regulatory sites Computational modelling -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization -
hands-on tutorial
Teaching experiences
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Live Coding is a Skill
• beginnerTeaching and Hosting Galaxy training -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Visualisation with Circos
• beginnerVisualisation -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Variant Calling Workflow
• beginnerSoftware engineering Foundations of Data Science