Training materials
Keywords: Sequence analysis or admin or assembly
and Contributors: Anatole Chessel or Bilal Shaikh or Dr. Paul Shaw or Helena Rasche or Wolfgang Maier
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hands-on tutorial
Screening assembled genomes for contamination using NCBI FCS
• beginnerSequence analysis -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
Hands-on for 'Use Singularity containers for running Galaxy jobs' tutorial
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hands-on tutorial
Removal of human reads from SARS-CoV-2 sequencing data
•• intermediateSequence analysis covid19 -
slides
Slides for 'Server Maintenance and Backups' tutorial
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hands-on tutorial
Mapping
• beginnerSequence analysis Mapping