Training materials
Difficulty level: Intermediate
and Contributors: Alvaro Gonzalez or Célia Michotey or David Philip Judge or Dr. Stephen David Laycock or Mehmet Tekman or Wolfgang Maier
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hands-on tutorial
Hands-on for 'Avian influenza viral strain analysis from gene segment sequencing data' tutorial
•• intermediatevariant-analysis virology -
hands-on tutorial
Hands-on for 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial
•• intermediatevariant-analysis covid19 virology one-health -
hands-on tutorial
Hands-on for 'Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads' tutorial
•• intermediateassembly covid19 -
hands-on tutorial
Hands-on for 'Removal of human reads from SARS-CoV-2 sequencing data' tutorial
•• intermediatesequence-analysis covid19 -
slides
An introduction to scRNA-seq data analysis
•• intermediateTranscriptomics Single Cell -
Video
A common framework for designing portable federated pipelines
•• intermediateData architecture, analysis and design data access federated data analysis -
Documentation, Exercise, Handout, Scripts
PPB18 - Programming in Python for Biologists (2018)
•• intermediateData retrieval Data handling Bioinformatics Biology Biological databases