Training materials
Scientific topics: Whole genomes
and Contributors: Alvaro Gonzalez or Bazante Sanders or Dr. Stephen David Laycock or Eija Korpelainen or Mattias Strömberg or NBIS - National Bioinformatics Infrastructure S... or SIB Swiss Institute of Bioinformatics
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
NBISweden/workshop-pgip
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sib-swiss/NGS-introduction-training
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NBISweden/workshop-epigenomics-RTDs
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NBISweden/workshop-ngsintro
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hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
course materials, Training materials, Slides, Video
RNA-seq data analysis using Chipster