Training materials
Difficulty level: Intermediate
and Contributors: Alvaro Gonzalez or Bérénice Batut or Donny Vrins or Krzysztof Poterlowicz or Lennart Martens or Nene Barry
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hands-on tutorial
Sequence data submission to ENA
•• intermediateFAIR ENA sequence datasets -
hands-on tutorial
Making clinical datasets FAIR
•• intermediateFAIR clinical data -
hands-on tutorial
Hands-on for 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial
•• intermediatevariant-analysis covid19 virology one-health -
hands-on tutorial
Hands-on for 'Python - Subprocess' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Python - Globbing' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Python - Argparse
•• intermediateSoftware engineering Foundations of Data Science -
hands-on tutorial
Make & Snakemake
•• intermediateSoftware engineering Foundations of Data Science -
hands-on tutorial
Hands-on for 'Advanced R in Galaxy' tutorial
•• intermediatedata-science R -
Video
A common framework for designing portable federated pipelines
•• intermediateData architecture, analysis and design data access federated data analysis -
Documentation, Exercise, Handout, Scripts
PDA19 - Proteomics Data Analysis (2019)
•• intermediateProteomics Biological databases Mass spectrometry data
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