Training materials
Difficulty level: Beginner
and Licence: Creative Commons Attribution 4.0 International
and Contributors: Allegra Via or Daniel Neves or Erwan Corre or Melanie Föll or Roland Krause
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slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Label-free data analysis using MaxQuant' tutorial
• beginnerproteomics DDA label-free -
hands-on tutorial
Hands-on for 'Mass spectrometry imaging: Loading and exploring MSI data' tutorial
• beginnerproteomics mouse imaging -
hands-on tutorial
Mass spectrometry imaging: Examining the spatial distribution of analytes
• beginnerMetabolomics -
hands-on tutorial
How to reproduce published Galaxy analyses
• beginnerIntroduction to Galaxy Analyses -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
Presentation
Data publishing and archival
• beginnerData publishing data archiving Data preserving -
Presentation
Practicalities of data handling
• beginnerData security Data acquisition Data management Data handling data encryption data protection setup checksums Data transfer Data storage data organisation
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