Training materials
Difficulty level: Beginner or Intermediate
and Contributors: Allegra Via or Bérénice Batut or Charlotte Soneson or Dr. Nils Gehlenborg or Erik Garrison
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hands-on tutorial
Upload data to Galaxy
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
Hands-on for 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial
•• intermediatevariant-analysis covid19 virology one-health -
hands-on tutorial
Hands-on for 'Reference-based RNA-Seq data analysis' tutorial
• beginnertranscriptomics bulk rna-seq collections drosophila QC cyoa -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Advanced R in Galaxy' tutorial
•• intermediatedata-science R -
hands-on tutorial
From peaks to genes
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
Mapping
• beginnerSequence analysis Mapping -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
Documentation, Exercise, Handout, Scripts
CPANG19 - Computational PANGenomics (2019)
•• intermediateGenomics
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