Training materials
Difficulty level: Advanced or Beginner
and Contributors: Allegra Via or Anatole Chessel or Eija Korpelainen or Erasmus+ Programme or Prof. Frederic Fol Leymarie or Sandra Ng or Thomas Denecker
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video
RDMbites | Data catalogues for large projects
• beginnerresearch data management RDM -
video
RDMbites | Data catalogues for different data types
• beginnerresearch data management RDM -
video
RDMbites | Using a data catalogue within a research team
• beginnerdata management -
hands-on tutorial
Genomic Data Visualisation with JBrowse
• beginnerVisualisation gmod jbrowse1 -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
RNA Seq Counts to Viz in R
• beginnerTranscriptomics interactive-tools -
hands-on tutorial
CLI basics
• beginnerSoftware engineering Foundations of Data Science bash jupyter-notebook -
hands-on tutorial
dplyr & tidyverse for data processing
••• advancedSoftware engineering Foundations of Data Science R jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Introduction to Python
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
RStudio in Galaxy
• beginnerUsing Galaxy and Managing your Data interactive-tools