Training materials
Difficulty level: Intermediate
and Contributors: Allegra Via or Alvaro Gonzalez or Andrew Mason or Christopher Barnett or Harald Barsnes or Lieven Clement or Sabine Österle
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Video
RDMbites: Sequencing data
•• intermediatetranscriptomics FASTQ FastQC Sequencing -
hands-on tutorial
Analysis of molecular dynamics simulations
•• intermediateComputational chemistry -
hands-on tutorial
Running molecular dynamics simulations using NAMD
•• intermediateComputational chemistry -
hands-on tutorial
Setting up molecular systems
•• intermediateComputational chemistry -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
PSLS22 Practical Statistics for the Life Sciences
•• intermediate -
Video
A common framework for designing portable federated pipelines
•• intermediateData architecture, analysis and design data access federated data analysis -
Documentation, Exercise, Handout, Scripts
PDA19 - Proteomics Data Analysis (2019)
•• intermediateProteomics Biological databases Mass spectrometry data -
Documentation, Exercise, Handout, Scripts
PDA18 - Proteomics Data Analysis (2018)
•• intermediateProteomics Biological databases Mass spectrometry data
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