Training materials
Contributors: Alireza Khanteymoori or Coline Royaux or Eija Korpelainen or Erwan Corre or Guillaume Gricourt or Michael Parkin or Simon Gladman or Vitor Sousa
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ekorpela/cloud-vm-workshop
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slides
Server Maintenance: Cleanup, Backup, and Restoration
• beginnerGalaxy Server administration -
hands-on tutorial
Hands-on for 'Visualize EBV cube data with Panoply netCDF viewer' tutorial
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hands-on tutorial
Evaluating and ranking a set of pathways based on multiple metrics
• beginnerSynthetic biology Synthetic Biology -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote