Training materials
Target audience: Students
and Contributors: Alireza Khanteymoori or Clemens Blank or Dave Clements or Dr. Iain Milne or Harald Barsnes or Harriet Dashnow or The Carpentries or Torsten Seemann
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hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
2: RNA-seq counts to genes
• beginnerTranscriptomics QC limma-voom mouse -
hands-on tutorial
1: RNA-Seq reads to counts
• beginnerTranscriptomics QC collections mouse -
hands-on tutorial
Regression in Machine Learning
• beginnerStatistics and probability Statistics and machine learning -
hands-on tutorial
Classification in Machine Learning
• beginnerStatistics and probability Statistics and machine learning -
hands-on tutorial
Clustering in Machine Learning
• beginnerStatistics and probability Statistics and machine learning -
hands-on tutorial
Metaproteomics tutorial
• beginnerProteomics Proteogenomics Biodiversity Taxonomy microgalaxy -
hands-on tutorial
Hands-on for '16S Microbial Analysis with mothur (extended)' tutorial