Training materials
Licence: Creative Commons Attribution 4.0 International
and Keywords: amr or collections
and Contributors: Alexandre Cormier or Helena Rasche or John "Scooter" Morris or Jure Dimec or Prof. Tom Freeman
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq -
hands-on tutorial
Rule Based Uploader: Advanced
••• advancedUsing Galaxy and Managing your Data collections tags -
hands-on tutorial
Rule Based Uploader
•• intermediateUsing Galaxy and Managing your Data collections tags